If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 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'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 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'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 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=> 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 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'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 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'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ), 'gf_id' => 'HOM05D000560', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000560' ), 'data_identifier' => 'HOM05D000560', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000560', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '984', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01360' => 'bna', 'A02p05610' => 'bna', 'A02p22260' => 'bna', 'A03p05400' => 'bna', 'A03p09510' => 'bna', 'A03p09520' => 'bna', 'A03p27170' => 'bna', 'A03p38970' => 'bna', 'A03p46220' => 'bna', 'A06p01000' => 'bna', 'A06p13330' => 'bna', 'A07p04070' => 'bna', 'A07p43880' => 'bna', 'A08p01550' => 'bna', 'A10p20180' => 'bna', 'A10p20190' => 'bna', 'A10p25710' => 'bna', 'Aa31LG10G1730' => 'aar', 'Aa31LG10G8670' => 'aar', 'Aa31LG1G8890' => 'aar', 'Aa31LG3G15140' => 'aar', 'Aa31LG4G2350' => 'aar', 'Aa31LG8G14200' => 'aar', 'Aa31LG8G2020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1266' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.267' => 'aag', 'Actinidia03542' => 'ach', 'Actinidia15467' => 'ach', 'Actinidia17022' => 'ach', 'Actinidia24619' => 'ach', 'Actinidia24620' => 'ach', 'Actinidia25698' => 'ach', 'Actinidia27565' => 'ach', 'Actinidia27566' => 'ach', 'Actinidia29919' => 'ach', 'Actinidia30201' => 'ach', 'Actinidia32027' => 'ach', 'Actinidia38466' => 'ach', 'Actinidia38467' => 'ach', 'Actinidia39677' => 'ach', 'Ah.00g000580' => 'amhyb', 'Ah.01g005600' => 'amhyb', 'Ah.01g023350' => 'amhyb', 'Ah.06g185980' => 'amhyb', 'Ah.06g193690' => 'amhyb', 'Ah.06g193700' => 'amhyb', 'Ah.06g193710' => 'amhyb', 'Ah.06g193760' => 'amhyb', 'Ah.07g208610' => 'amhyb', 'Ah.07g208690' => 'amhyb', 'Ah.09g231340' => 'amhyb', 'Ah.10g033970' => 'amhyb', 'Ah.11g040460' => 'amhyb', 'Ah.11g044320' => 'amhyb', 'Ah.11g044330' => 'amhyb', 'Ah.11g044340' => 'amhyb', 'Ah.12g055860' => 'amhyb', 'Ah.14g085090' => 'amhyb', 'AL1G62030' => 'aly', 'AL2G39010' => 'aly', 'AL3G27120' => 'aly', 'AL3G49790' => 'aly', 'AL3G49800' => 'aly', 'AL6G22870' => 'aly', 'AL6G31030' => 'aly', 'Aqoxy1G03850' => 'aox', 'Aqoxy5G01080' => 'aox', 'Aqoxy5G01081' => 'aox', 'Aqoxy6G01910' => 'aox', 'Aqoxy7G01080' => 'aox', 'Aqoxy7G01081' => 'aox', 'Aqoxy7G01085' => 'aox', 'arahy.Tifrunner.gnm1.ann1.044LWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.411K7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.745V0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALL5TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1Q40H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8BQP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U999Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW08M3' => 'arhy', 'AT1G49260' => 'ath', 'AT1G53470' => 'ath', 'AT1G78610' => 'ath', 'AT2G17000' => 'ath', 'AT2G17010' => 'ath', 'AT3G14810' => 'ath', 'AT5G12080' => 'ath', 'AT5G19520' => 'ath', 'ATR0598G340' => 'atr', 'ATR0661G426' => 'atr', 'ATR0829G173' => 'atr', 'ATR0829G212' => 'atr', 'Atru.chr13.203' => 'acertr', 'Atru.chr2.1679' => 'acertr', 'Atru.chr2.1680' => 'acertr', 'Atru.chr2.2007' => 'acertr', 'Atru.chr5.3460' => 'acertr', 'Atru.chr5.3461' => 'acertr', 'Atru.chr5.3463' => 'acertr', 'Atru.chr7.1666' => 'acertr', 'Atru.chr7.1667' => 'acertr', 'Atru.chr7.1863' => 'acertr', 'Atru.chr8.2695' => 'acertr', 'AUR62000105' => 'cqu', 'AUR62007390' => 'cqu', 'AUR62009092' => 'cqu', 'AUR62009093' => 'cqu', 'AUR62009094' => 'cqu', 'AUR62010001' => 'cqu', 'AUR62011724' => 'cqu', 'AUR62012904' => 'cqu', 'AUR62012989' => 'cqu', 'AUR62013859' => 'cqu', 'AUR62016516' => 'cqu', 'AUR62019280' => 'cqu', 'AUR62020577' => 'cqu', 'AUR62020578' => 'cqu', 'AUR62025180' => 'cqu', 'AUR62025181' => 'cqu', 'AUR62027339' => 'cqu', 'AUR62028993' => 'cqu', 'AUR62031869' => 'cqu', 'AUR62044281' => 'cqu', 'AUR62044518' => 'cqu', 'BcaB01g02992' => 'bca', 'BcaB01g04856' => 'bca', 'BcaB01g04857' => 'bca', 'BcaB01g05150' => 'bca', 'BcaB01g05430' => 'bca', 'BcaB03g16437' => 'bca', 'BcaB04g17078' => 'bca', 'BcaB04g18859' => 'bca', 'BcaB05g23384' => 'bca', 'BcaB05g23385' => 'bca', 'BcaB07g31912' => 'bca', 'BcaB07g33327' => 'bca', 'BcaB08g34685' => 'bca', 'BcaB08g34686' => 'bca', 'BcaC01g01393' => 'bca', 'BcaC01g03914' => 'bca', 'BcaC01g04885' => 'bca', 'BcaC03g13410' => 'bca', 'BcaC03g13682' => 'bca', 'BcaC03g13683' => 'bca', 'BcaC03g15827' => 'bca', 'BcaC04g24214' => 'bca', 'BcaC04g24215' => 'bca', 'BcaC06g36206' => 'bca', 'BcaC08g43534' => 'bca', 'BcaC08g46738' => 'bca', 'BcaC08g47428' => 'bca', 'BcaNung02629' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02340' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p02350' => 'bna', 'BolC2t06504H' => 'bol', 'BolC2t06960H' => 'bol', 'BolC2t06962H' => 'bol', 'BolC3t13131H' => 'bol', 'BolC3t13133H' => 'bol', 'BolC3t13137H' => 'bol', 'BolC3t13579H' => 'bol', 'BolC3t13580H' => 'bol', 'BolC3t15602H' => 'bol', 'BolC3t16990H' => 'bol', 'BolC3t18052H' => 'bol', 'BolC3t21471H' => 'bol', 'BolC5t30285H' => 'bol', 'BolC6t36001H' => 'bol', 'BolC6t40270H' => 'bol', 'BolC7t41069H' => 'bol', 'BolC9t58531H' => 'bol', 'BolC9t58532H' => 'bol', 'BolC9t59309H' => 'bol', 'BraA02t05115Z' => 'bra', 'BraA02t05513Z' => 'bra', 'BraA02t07232Z' => 'bra', 'BraA03t09879Z' => 'bra', 'BraA03t10269Z' => 'bra', 'BraA03t10270Z' => 'bra', 'BraA03t11930Z' => 'bra', 'BraA03t13044Z' => 'bra', 'BraA03t13746Z' => 'bra', 'BraA06t23328Z' => 'bra', 'BraA06t24486Z' => 'bra', 'BraA07t28200Z' => 'bra', 'BraA07t31895Z' => 'bra', 'BraA08t32209Z' => 'bra', 'BraA10t44090Z' => 'bra', 'BraA10t44636Z' => 'bra', 'C02p05600' => 'bna', 'C02p35690' => 'bna', 'C03p06240' => 'bna', 'C03p06260' => 'bna', 'C03p06290' => 'bna', 'C03p11090' => 'bna', 'C03p11100' => 'bna', 'C03p32650' => 'bna', 'C03p32660' => 'bna', 'C03p47250' => 'bna', 'C03p57810' => 'bna', 'C03p91540' => 'bna', 'C05p15800' => 'bna', 'C06p09240' => 'bna', 'C06p52510' => 'bna', 'C07p06490' => 'bna', 'C09p56750' => 'bna', 'C09p56760' => 'bna', 'C09p64780' => 'bna', 'CAN.G1.73' => 'can', 'CAN.G311.83' => 'can', 'CAN.G401.14' => 'can', 'CAN.G401.16' => 'can', 'CAN.G401.17' => 'can', 'CAN.G42.12' => 'can', 'CANSAT25G0601' => 'cansat', 'CANSAT25G0714' => 'cansat', 'CANSAT25G1174' => 'cansat', 'CANSAT25G1575' => 'cansat', 'CANSAT25G1819' => 'cansat', 'CANSAT25G2361' => 'cansat', 'CANSAT25G2363' => 'cansat', 'CANSAT25G2499' => 'cansat', 'CANSAT56G1003' => 'cansat', 'CANSAT64G2126' => 'cansat', 'CARHR043690' => 'chi', 'CARHR072100' => 'chi', 'CARHR089750' => 'chi', 'CARHR107320' => 'chi', 'CARHR107330' => 'chi', 'CARHR193380' => 'chi', 'CARHR201050' => 'chi', 'Carub.0001s4266' => 'cru', 'Carub.0002s2546' => 'cru', 'Carub.0003s1447' => 'cru', 'Carub.0003s3087' => 'cru', 'Carub.0003s3088' => 'cru', 'Carub.0004s0372' => 'cru', 'Carub.0006s1059' => 'cru', 'Carub.0006s1787' => 'cru', 'Ca_03287_v3' => 'car', 'Ca_13351_v3' => 'car', 'Ca_15837_v3' => 'car', 'Ca_22483_v3' => 'car', 'Ca_30347_v3' => 'car', 'CBR_g37461' => 'cbr', 'Cc06_g11920' => 'ccan', 'Cc06_g11940' => 'ccan', 'Cc08_g01310' => 'ccan', 'Cc08_g05210' => 'ccan', 'Cc09_g10410' => 'ccan', 'Cc10_g01030' => 'ccan', 'Cc10_g01050' => 'ccan', 'CDE05G0029' => 'cde', 'CDE05G2277' => 'cde', 'CDE05G2603' => 'cde', 'CDE07G2026' => 'cde', 'Cfa005299' => 'cfa', 'Cfa012583' => 'cfa', 'Cfa014017' => 'cfa', 'Cfa018009' => 'cfa', 'Cfa018010' => 'cfa', 'Cfa026226' => 'cfa', 'Ciclev10000412m.g' => 'ccl', 'Ciclev10003557m.g' => 'ccl', 'Ciclev10007516m.g' => 'ccl', 'Ciclev10010725m.g' => 'ccl', 'Ciclev10018823m.g' => 'ccl', 'Ciclev10025137m.g' => 'ccl', 'Ciclev10025168m.g' => 'ccl', 'Ciclev10027767m.g' => 'ccl', 'Ciclev10030800m.g' => 'ccl', 'Ciclev10031007m.g' => 'ccl', 'Ciclev10033585m.g' => 'ccl', 'CiPaw.01G091200' => 'cil', 'CiPaw.03G209800' => 'cil', 'CiPaw.04G145500' => 'cil', 'CiPaw.05G086100' => 'cil', 'CiPaw.06G119400' => 'cil', 'CiPaw.06G119500' => 'cil', 'CiPaw.07G142700' => 'cil', 'ClCG02G003840' => 'cla', 'ClCG02G011110' => 'cla', 'ClCG03G015250' => 'cla', 'ClCG05G015660' => 'cla', 'ClCG05G015680' => 'cla', 'ClCG06G008180' => 'cla', 'COL.COLO4_08542' => 'col', 'COL.COLO4_10036' => 'col', 'COL.COLO4_16841' => 'col', 'COL.COLO4_17475' => 'col', 'COL.COLO4_18013' => 'col', 'COL.COLO4_18128' => 'col', 'COL.COLO4_21122' => 'col', 'Cpa.g.sc126.38' => 'cpa', 'Cpa.g.sc20.126' => 'cpa', 'Cpa.g.sc28.80' => 'cpa', 'Cpa.g.sc28.81' => 'cpa', 'Cpa.g.sc77.60' => 'cpa', 'Cre10.g453400' => 'cre', 'Cre12.g505800' => 'cre', 'Cre13.g591100' => 'cre', 'CsaV3_1G040800' => 'csa', 'CsaV3_2G010960' => 'csa', 'CsaV3_4G035980' => 'csa', 'CsaV3_4G035990' => 'csa', 'CsaV3_4G036000' => 'csa', 'CsaV3_6G012580' => 'csa', 'CsaV3_7G001300' => 'csa', 'CSS0002617' => 'camsi', 'CSS0003090' => 'camsi', 'CSS0005017' => 'camsi', 'CSS0006982' => 'camsi', 'CSS0008524' => 'camsi', 'CSS0008563' => 'camsi', 'CSS0008858' => 'camsi', 'CSS0012809' => 'camsi', 'CSS0017300' => 'camsi', 'CSS0019166' => 'camsi', 'CSS0022934' => 'camsi', 'CSS0028723' => 'camsi', 'CSS0029148' => 'camsi', 'CSS0029188' => 'camsi', 'CSS0036399' => 'camsi', 'CSS0036525' => 'camsi', 'CSS0041424' => 'camsi', 'CSS0043228' => 'camsi', 'CSS0044558' => 'camsi', 'CSS0045454' => 'camsi', 'CSS0049263' => 'camsi', 'CSS0049907' => 'camsi', 'DCAR_000708' => 'dca', 'DCAR_000820' => 'dca', 'DCAR_003714' => 'dca', 'DCAR_004384' => 'dca', 'DCAR_006271' => 'dca', 'DCAR_009515' => 'dca', 'DCAR_009516' => 'dca', 'DCAR_009517' => 'dca', 'DCAR_009518' => 'dca', 'DCAR_010498' => 'dca', 'DCAR_013897' => 'dca', 'DCAR_016743' => 'dca', 'DCAR_018024' => 'dca', 'DCAR_022179' => 'dca', 'DCAR_022419' => 'dca', 'DCAR_022826' => 'dca', 'DCAR_022944' => 'dca', 'DCAR_023867' => 'dca', 'Dinv08515' => 'din', 'Dinv14135' => 'din', 'Dinv14136' => 'din', 'Dinv22864' => 'din', 'Dinv25576' => 'din', 'Dinv25577' => 'din', 'Dinv28018' => 'din', 'Dinv31903' => 'din', 'Dinv31905' => 'din', 'Dinv35448' => 'din', 'Dinv41835' => 'din', 'Dinv43530' => 'din', 'Duzib093G1020' => 'dzi', 'Duzib132G1019' => 'dzi', 'Duzib150G0621' => 'dzi', 'Duzib168G1288' => 'dzi', 'Duzib168G1529' => 'dzi', 'Duzib177G0094' => 'dzi', 'Duzib205G1884' => 'dzi', 'Duzib213G0187' => 'dzi', 'Duzib213G0596' => 'dzi', 'Duzib268G0445' => 'dzi', 'ECA233G0524' => 'eca', 'ECA233G0979' => 'eca', 'ECA233G1653' => 'eca', 'ECA233G2611' => 'eca', 'ECA233G4865' => 'eca', 'ECA233G5994' => 'eca', 'ECA234G0744' => 'eca', 'ECA234G1451' => 'eca', 'ECA234G1981' => 'eca', 'ECA234G1991' => 'eca', 'ECA234G2197' => 'eca', 'ECA234G2945' => 'eca', 'ECA234G3406' => 'eca', 'ECA236G1166' => 'eca', 'ECA236G4705' => 'eca', 'ECA238G0946' => 'eca', 'ECA238G2676' => 'eca', 'ECA240G1218' => 'eca', 'ECA246G2521' => 'eca', 'ECA246G3799' => 'eca', 'ECA247G2511' => 'eca', 'ECA247G3276' => 'eca', 'EL10Ac1g02061' => 'bvu', 'EL10Ac2g03798' => 'bvu', 'EL10Ac4g09104' => 'bvu', 'EL10Ac4g10289' => 'bvu', 'EL10Ac5g11955' => 'bvu', 'EL10Ac5g11960' => 'bvu', 'EL10Ac5g11961' => 'bvu', 'EL10Ac8g19116' => 'bvu', 'EL10Ac9g21327' => 'bvu', 'EL10Ac9g22048' => 'bvu', 'Eucgr.B03162' => 'egr', 'Eucgr.C00709' => 'egr', 'Eucgr.C00712' => 'egr', 'Eucgr.C00714' => 'egr', 'Eucgr.C00715' => 'egr', 'Eucgr.C00836' => 'egr', 'Eucgr.C03563' => 'egr', 'Eucgr.C03564' => 'egr', 'Eucgr.C03565' => 'egr', 'Eucgr.C03566' => 'egr', 'Eucgr.C03567' => 'egr', 'Eucgr.D00926' => 'egr', 'Eucgr.E01771' => 'egr', 'Eucgr.F01703' => 'egr', 'Eucgr.F01704' => 'egr', 'Eucgr.F03704' => 'egr', 'Eucgr.G01784' => 'egr', 'Eucgr.G01799' => 'egr', 'Eucgr.G01800' => 'egr', 'Eucgr.G01801' => 'egr', 'Eucgr.G01802' => 'egr', 'Eucgr.G01803' => 'egr', 'Eucgr.G02897' => 'egr', 'Eucgr.I01463' => 'egr', 'Eucgr.L03384' => 'egr', 'FAN11G2766' => 'fan', 'FAN15G0028' => 'fan', 'FAN15G0750' => 'fan', 'FAN15G1311' => 'fan', 'FAN15G2139' => 'fan', 'FAN15G3484' => 'fan', 'FAN15G3718' => 'fan', 'FAN19G1190' => 'fan', 'FAN20G1499' => 'fan', 'FAN20G2700' => 'fan', 'FAN21G1571' => 'fan', 'FAN23G2138' => 'fan', 'FAN24G1183' => 'fan', 'FAN24G2109' => 'fan', 'FAN24G2467' => 'fan', 'FAN24G2853' => 'fan', 'FAN25G0052' => 'fan', 'FAN26G0986' => 'fan', 'FAN26G1112' => 'fan', 'FAN27G0255' => 'fan', 'FAN27G1334' => 'fan', 'FAN27G2549' => 'fan', 'FvH4_1g08260' => 'fve', 'FvH4_2g15780' => 'fve', 'FvH4_2g31211' => 'fve', 'FvH4_2g31220' => 'fve', 'FvH4_2g31230' => 'fve', 'FvH4_2g31240' => 'fve', 'FvH4_2g37870' => 'fve', 'FvH4_3g39430' => 'fve', 'Glyma.04G055200' => 'gma', 'Glyma.06G055400' => 'gma', 'Glyma.09G067750' => 'gma', 'Glyma.09G067800' => 'gma', 'Glyma.10G284300' => 'gma', 'Glyma.15G175800' => 'gma', 'Glyma.16G075000' => 'gma', 'Glyma.16G105100' => 'gma', 'Glyma.20G105400' => 'gma', 'Gohir.A01G047900' => 'ghi', 'Gohir.A01G171200' => 'ghi', 'Gohir.A04G044600' => 'ghi', 'Gohir.A05G039300' => 'ghi', 'Gohir.A05G182200' => 'ghi', 'Gohir.A06G075500' => 'ghi', 'Gohir.A06G082800' => 'ghi', 'Gohir.A06G082880' => 'ghi', 'Gohir.A07G020400' => 'ghi', 'Gohir.A13G085350' => 'ghi', 'Gohir.A13G085400' => 'ghi', 'Gohir.A13G151100' => 'ghi', 'Gohir.A13G151200' => 'ghi', 'Gohir.D01G038500' => 'ghi', 'Gohir.D01G162200' => 'ghi', 'Gohir.D05G040800' => 'ghi', 'Gohir.D05G185200' => 'ghi', 'Gohir.D05G338500' => 'ghi', 'Gohir.D06G074400' => 'ghi', 'Gohir.D06G083700' => 'ghi', 'Gohir.D07G020100' => 'ghi', 'Gohir.D10G244548' => 'ghi', 'Gohir.D13G100300' => 'ghi', 'Gohir.D13G155200' => 'ghi', 'Gorai.001G020900' => 'gra', 'Gorai.002G047300' => 'gra', 'Gorai.002G201100' => 'gra', 'Gorai.009G041300' => 'gra', 'Gorai.009G190500' => 'gra', 'Gorai.009G363400' => 'gra', 'Gorai.010G086800' => 'gra', 'Gorai.010G097200' => 'gra', 'Gorai.013G112200' => 'gra', 'Gorai.013G175700' => 'gra', 'GSVIVG01008726001' => 'vvi', 'GSVIVG01011320001' => 'vvi', 'GSVIVG01015112001' => 'vvi', 'GSVIVG01015113001' => 'vvi', 'GSVIVG01023959001' => 'vvi', 'GSVIVG01023963001' => 'vvi', 'GSVIVG01035448001' => 'vvi', 'HanXRQChr05g0141831' => 'han', 'HanXRQChr05g0147081' => 'han', 'HanXRQChr06g0184851' => 'han', 'HanXRQChr08g0215351' => 'han', 'HanXRQChr08g0215361' => 'han', 'HanXRQChr08g0215381' => 'han', 'HanXRQChr08g0215391' => 'han', 'HanXRQChr08g0215421' => 'han', 'HanXRQChr10g0300341' => 'han', 'HanXRQChr10g0305231' => 'han', 'HanXRQChr10g0305251' => 'han', 'HanXRQChr12g0354311' => 'han', 'HanXRQChr12g0359021' => 'han', 'HanXRQChr14g0428441' => 'han', 'HanXRQChr14g0428471' => 'han', 'HanXRQChr14g0428521' => 'han', 'HanXRQChr15g0477861' => 'han', 'HanXRQChr15g0491181' => 'han', 'HanXRQChr17g0544131' => 'han', 'HanXRQChr17g0553431' => 'han', 'HanXRQChr17g0557351' => 'han', 'Haze_02085' => 'cav', 'Haze_02087' => 'cav', 'Haze_08073' => 'cav', 'Haze_15804' => 'cav', 'Haze_18119' => 'cav', 'Haze_18120' => 'cav', 'Haze_18121' => 'cav', 'Haze_22724' => 'cav', 'Haze_25973' => 'cav', 'Hma1.2p1_0163F.1_g072780' => 'hma', 'Hma1.2p1_0990F.1_g244940' => 'hma', 'Hma1.2p1_1470F.1_g285610' => 'hma', 'Hma1.2p1_1560F.1_g290680' => 'hma', 'Hma1.2p1_2322F.1_g319880' => 'hma', 'Hma1.2p1_2849F.1_g329370' => 'hma', 'HPP92_004374' => 'vpl', 'HPP92_014545' => 'vpl', 'HPP92_020714' => 'vpl', 'HPP92_021053' => 'vpl', 'Hund01728' => 'sun', 'Hund03301' => 'sun', 'Hund05147' => 'sun', 'Hund11282' => 'sun', 'Hund14343' => 'sun', 'Hund19428' => 'sun', 'Hund22056' => 'sun', 'Hund22057' => 'sun', 'Hund22059' => 'sun', 'Hund22062' => 'sun', 'Hund22523' => 'sun', 'Hund26001' => 'sun', 'Lalb_Chr02g0143551' => 'lal', 'Lalb_Chr05g0229431' => 'lal', 'Lalb_Chr06g0163791' => 'lal', 'Lalb_Chr06g0163801' => 'lal', 'Lalb_Chr08g0244851' => 'lal', 'Lalb_Chr08g0246761' => 'lal', 'Lalb_Chr23g0264901' => 'lal', 'Lalb_Chr23g0276421' => 'lal', 'Lj1A1038G54' => 'lonja', 'Lj1A1038G55' => 'lonja', 'Lj1g0002367' => 'lja', 'Lj1g0002543' => 'lja', 'Lj1g0026076' => 'lja', 'Lj3P610T4' => 'lonja', 'Lj4A16T127' => 'lonja', 'Lj4A16T128' => 'lonja', 'Lj4A802T106' => 'lonja', 'Lj4A802T107' => 'lonja', 'Lj4A906G36' => 'lonja', 'Lj4A906T33' => 'lonja', 'Lj4A906T34' => 'lonja', 'Lj4A909T83' => 'lonja', 'Lj4C909T8' => 'lonja', 'Lj4g0027258' => 'lja', 'Lj5A175T97' => 'lonja', 'Lj5C175T11' => 'lonja', 'Lj5g0024325' => 'lja', 'Lj6g0006765' => 'lja', 'Lj7A225T45' => 'lonja', 'Lj7A228T31' => 'lonja', 'Lj7C683G13' => 'lonja', 'Lj7C683T5' => 'lonja', 'Lj8A482T27' => 'lonja', 'Lj9A613G32' => 'lonja', 'Lj9C401G13' => 'lonja', 'Lj9C615G9' => 'lonja', 'Lsat_1_v5_gn_2_5500' => 'lsa', 'Lsat_1_v5_gn_2_6581' => 'lsa', 'Lsat_1_v5_gn_2_6641' => 'lsa', 'Lsat_1_v5_gn_2_6661' => 'lsa', 'Lsat_1_v5_gn_3_47360' => 'lsa', 'Lsat_1_v5_gn_4_70061' => 'lsa', 'Lsat_1_v5_gn_5_141920' => 'lsa', 'Lsat_1_v5_gn_5_79541' => 'lsa', 'Lsat_1_v5_gn_5_79561' => 'lsa', 'Lsat_1_v5_gn_8_28941' => 'lsa', 'Manes.03G038300' => 'mes', 'Manes.03G038400' => 'mes', 'Manes.03G085500' => 'mes', 'Manes.04G069700' => 'mes', 'Manes.05G141700' => 'mes', 'Manes.15G097900' => 'mes', 'Manes.16G084300' => 'mes', 'Manes.16G097400' => 'mes', 'Manes.17G007600' => 'mes', 'Mapoly0014s0185' => 'mpo', 'Mapoly0151s0038' => 'mpo', 'MBI04_g12212_MAGBIO' => 'mbi', 'MBI04_g12213_MAGBIO' => 'mbi', 'MBI04_g44737_MAGBIO' => 'mbi', 'MBI04_g44738_MAGBIO' => 'mbi', 'MBI04_g46895_MAGBIO' => 'mbi', 'MBI05_g03757_MAGBIO' => 'mbi', 'MBI05_g10009_MAGBIO' => 'mbi', 'MBI05_g22417_MAGBIO' => 'mbi', 'MBI05_g32369_MAGBIO' => 'mbi', 'MBI05_g43412_MAGBIO' => 'mbi', 'MBI05_g43730_MAGBIO' => 'mbi', 'MBI08_g05540_MAGBIO' => 'mbi', 'MBI19_g11850_MAGBIO' => 'mbi', 'MCO05G611' => 'mco', 'MCO11G376' => 'mco', 'MD02G1086900' => 'mdo', 'MD02G1087000' => 'mdo', 'MD02G1238000' => 'mdo', 'MD02G1238200' => 'mdo', 'MD05G1126700' => 'mdo', 'MD07G1078300' => 'mdo', 'MD07G1078500' => 'mdo', 'MD08G1006800' => 'mdo', 'MD08G1006900' => 'mdo', 'MD08G1070000' => 'mdo', 'MD10G1129900' => 'mdo', 'MD15G1052100' => 'mdo', 'MD15G1214500' => 'mdo', 'MD15G1214600' => 'mdo', 'Medtr1g113850' => 'mtr', 'Medtr2g041220' => 'mtr', 'Medtr3g104920' => 'mtr', 'Medtr3g104940' => 'mtr', 'Medtr3g104990' => 'mtr', 'Medtr4g081940' => 'mtr', 'Medtr8g071250' => 'mtr', 'MELO3C013323.2' => 'cme', 'MELO3C013665.2' => 'cme', 'MELO3C015507.2' => 'cme', 'MELO3C016905.2' => 'cme', 'MELO3C016906.2' => 'cme', 'MELO3C016908.2' => 'cme', 'MELO3C020377.2' => 'cme', 'Migut.A00088' => 'egut', 'Migut.A00089' => 'egut', 'Migut.A00554' => 'egut', 'Migut.B00044' => 'egut', 'Migut.C00908' => 'egut', 'Migut.E01573' => 'egut', 'Migut.J00949' => 'egut', 'Migut.K01236' => 'egut', 'MSTRG.10524' => 'ama', 'MSTRG.11885' => 'ama', 'MSTRG.14062' => 'ama', 'MSTRG.19475' => 'ama', 'Nitab4.5_0000108g0460' => 'nta', 'Nitab4.5_0000498g0150' => 'nta', 'Nitab4.5_0001215g0020' => 'nta', 'Nitab4.5_0001368g0010' => 'nta', 'Nitab4.5_0001936g0070' => 'nta', 'Nitab4.5_0001936g0080' => 'nta', 'Nitab4.5_0002353g0030' => 'nta', 'Nitab4.5_0002834g0010' => 'nta', 'Nitab4.5_0003280g0020' => 'nta', 'Nitab4.5_0004953g0020' => 'nta', 'Nitab4.5_0004953g0030' => 'nta', 'Nitab4.5_0008066g0020' => 'nta', 'Nitab4.5_0008882g0010' => 'nta', 'Nitab4.5_0009678g0030' => 'nta', 'Nitab4.5_0009678g0040' => 'nta', 'Nitab4.5_0011065g0010' => 'nta', 'Nitab4.5_0014425g0020' => 'nta', 'Nn010s41450' => 'nnu', 'Nn1g02063' => 'nnu', 'Nn1g02079' => 'nnu', 'Nn3g19247' => 'nnu', 'Nn5g30863' => 'nnu', 'Nn6g31872' => 'nnu', 'Nn6g35594' => 'nnu', 'Oeu003978.1' => 'oeu', 'Oeu014027.1' => 'oeu', 'Oeu015552.1' => 'oeu', 'Oeu018030.1' => 'oeu', 'Oeu022782.2' => 'oeu', 'Oeu027283.1' => 'oeu', 'Oeu027611.1' => 'oeu', 'Oeu029654.3' => 'oeu', 'Oeu046811.1' => 'oeu', 'Oeu046812.2' => 'oeu', 'Oeu049523.1' => 'oeu', 'Oeu051142.1' => 'oeu', 'Oeu056219.1' => 'oeu', 'Os02g0668000' => 'osa', 'Os04g0561000' => 'osa', 'Os06g0205600' => 'osa', 'Peaxi162Scf00042g01214' => 'pax', 'Peaxi162Scf00053g01410' => 'pax', 'Peaxi162Scf00053g01411' => 'pax', 'Peaxi162Scf00053g01412' => 'pax', 'Peaxi162Scf00064g00826' => 'pax', 'Peaxi162Scf00101g01412' => 'pax', 'Peaxi162Scf00174g01113' => 'pax', 'Peaxi162Scf00289g00010' => 'pax', 'Peaxi162Scf00408g00810' => 'pax', 'Peaxi162Scf00408g00823' => 'pax', 'Peaxi162Scf00544g00033' => 'pax', 'Peaxi162Scf01290g00124' => 'pax', 'PGR031G0351' => 'pgr', 'PGR031G1147' => 'pgr', 'PGR031G2024' => 'pgr', 'PGR031G2402' => 'pgr', 'PGR042G0785' => 'pgr', 'PGR042G1544' => 'pgr', 'PGR044G0348' => 'pgr', 'PGR044G1737' => 'pgr', 'PGR083G2721' => 'pgr', 'PGR102G0442' => 'pgr', 'PGR102G0954' => 'pgr', 'PGR102G2426' => 'pgr', 'PGR142G4256' => 'pgr', 'PGSC0003DMG400009888' => 'stu', 'PGSC0003DMG400018938' => 'stu', 'PGSC0003DMG400021745' => 'stu', 'PGSC0003DMG400029417' => 'stu', 'PGSC0003DMG400029879' => 'stu', 'Phvul.003G279800' => 'pvu', 'Phvul.007G016600' => 'pvu', 'Phvul.009G081300' => 'pvu', 'Phvul.009G228700' => 'pvu', 'Phvul.009G228800' => 'pvu', 'Potri.001G384100' => 'ptr', 'Potri.004G178900' => 'ptr', 'Potri.005G246600' => 'ptr', 'Potri.006G144100' => 'ptr', 'Potri.006G222500' => 'ptr', 'Potri.011G105500' => 'ptr', 'Potri.013G072800' => 'ptr', 'Potri.013G073000' => 'ptr', 'Pp3c10_12060' => 'ppa', 'Pp3c11_3390' => 'ppa', 'Pp3c1_10620' => 'ppa', 'Pp3c26_12710' => 'ppa', 'Pp3c27_4760' => 'ppa', 'Pp3c7_19980' => 'ppa', 'PRCOL_00002838' => 'pco', 'Prupe.1G358700' => 'ppe', 'Prupe.1G406100' => 'ppe', 'Prupe.2G100800' => 'ppe', 'Prupe.7G202700' => 'ppe', 'Prupe.8G170400' => 'ppe', 'Psat0s1070g0120' => 'psa', 'Psat0s2363g0040' => 'psa', 'Psat0s2363g0160' => 'psa', 'Psat1g132880' => 'psa', 'Psat4g110080' => 'psa', 'Psat6g232920' => 'psa', 'PSO063G1925' => 'pso', 'PSO063G3736' => 'pso', 'PSO170G1055' => 'pso', 'PSO170G5690' => 'pso', 'PSO407G0330' => 'pso', 'PSO421G0493' => 'pso', 'PSO478G0612' => 'pso', 'PSO541G1156' => 'pso', 'PSO541G3590' => 'pso', 'PSO675G0966' => 'pso', 'PSO675G1590' => 'pso', 'PSO675G4547' => 'pso', 'PSO675G4681' => 'pso', 'PSO782G2988' => 'pso', 'QL02p000188' => 'qlo', 'QL02p013119' => 'qlo', 'QL02p013133' => 'qlo', 'QL02p013159' => 'qlo', 'QL02p013188' => 'qlo', 'QL02p013220' => 'qlo', 'QL02p061039' => 'qlo', 'QL04p052445' => 'qlo', 'QL04p052503' => 'qlo', 'QL11p052576' => 'qlo', 'QL11p052592' => 'qlo', 'QL12p000829' => 'qlo', 'RcHm_v2.0_Chr1g0326931' => 'rch', 'RcHm_v2.0_Chr1g0326941' => 'rch', 'RcHm_v2.0_Chr1g0337341' => 'rch', 'RcHm_v2.0_Chr2g0094331' => 'rch', 'RcHm_v2.0_Chr3g0458911' => 'rch', 'RcHm_v2.0_Chr4g0390441' => 'rch', 'RcHm_v2.0_Chr5g0071021' => 'rch', 'RcHm_v2.0_Chr6g0276141' => 'rch', 'RcHm_v2.0_Chr6g0279131' => 'rch', 'RcHm_v2.0_Chr6g0283901' => 'rch', 'RcHm_v2.0_Chr6g0303751' => 'rch', 'RcHm_v2.0_Chr6g0311561' => 'rch', 'RcHm_v2.0_Chr6g0311571' => 'rch', 'RcHm_v2.0_Chr6g0311581' => 'rch', 'RcHm_v2.0_Chr6g0311591' => 'rch', 'Rhsim03G0229900' => 'rsi', 'Rhsim05G0012400' => 'rsi', 'Rhsim05G0052300' => 'rsi', 'Rhsim06G0010800' => 'rsi', 'Rhsim06G0110800' => 'rsi', 'Rhsim07G0183000' => 'rsi', 'Rhsim07G0251600' => 'rsi', 'Rhsim11G0025700' => 'rsi', 'Sabra04G0120400' => 'sbr', 'Sabra05G0190600' => 'sbr', 'Sabra06G0112800' => 'sbr', 'Sabra06G0114100' => 'sbr', 'Sabra06G0172000' => 'sbr', 'Sabra11G0075100' => 'sbr', 'Sabra11G0080600' => 'sbr', 'Sabra13G0062700' => 'sbr', 'Sabra13G0063000' => 'sbr', 'Sabra16G0253000' => 'sbr', 'SalBow1G5159' => 'sbo', 'SalBow1G5931' => 'sbo', 'SalBow4G1728' => 'sbo', 'SalBow4G1974' => 'sbo', 'SalBow6G1512' => 'sbo', 'SalBow7G0319' => 'sbo', 'Sc01g0006990' => 'sci', 'Sc02g0008930' => 'sci', 'Sc06g0009460' => 'sci', 'Sc06g0010670' => 'sci', 'Sc06g0010700' => 'sci', 'Sc06g0010710' => 'sci', 'Sc06g0010740' => 'sci', 'Sc07g0008520' => 'sci', 'Sc07g0008540' => 'sci', 'Sc08g0002690' => 'sci', 'Sc14g0002340' => 'sci', 'Sc18g0002420' => 'sci', 'Sc18g0006180' => 'sci', 'Sc23g0004240' => 'sci', 'Sed0004637' => 'sed', 'Sed0004729' => 'sed', 'Sed0005070' => 'sed', 'Sed0005471' => 'sed', 'Sed0008515' => 'sed', 'Sed0009965' => 'sed', 'Sed0011979' => 'sed', 'Sed0015215' => 'sed', 'Sed0020359' => 'sed', 'Sed0022115' => 'sed', 'Sed0024811' => 'sed', 'Sed0025235' => 'sed', 'Sed0028199' => 'sed', 'SEGI_26733' => 'sgi', 'SEGI_30315' => 'sgi', 'SEGI_39008' => 'sgi', 'SGA_v2.0_scaffold163G38001' => 'sas', 'SGA_v2.0_scaffold20G09176' => 'sas', 'SGA_v2.0_scaffold275G46542' => 'sas', 'SGA_v2.0_scaffold32G13316' => 'sas', 'SGA_v2.0_scaffold89G27405' => 'sas', 'SGA_v2.0_scaffold91G28083' => 'sas', 'SHI05783' => 'shi', 'SHI18369' => 'shi', 'SHI18829' => 'shi', 'SMO197G0032' => 'smo', 'SMO351G0120' => 'smo', 'SMO356G0572' => 'smo', 'SMO358G0632' => 'smo', 'Solyc04g082040.3' => 'sly', 'Solyc08g061980.4' => 'sly', 'Solyc10g055710.2' => 'sly', 'Solyc12g094420.2' => 'sly', 'Sopen04g035690' => 'spe', 'Sopen08g017540' => 'spe', 'Sopen10g025480' => 'spe', 'Sopen12g014910' => 'spe', 'Sopen12g031300' => 'spe', 'Sp1g40010' => 'spa', 'Sp3g13030' => 'spa', 'Sp3g30290' => 'spa', 'Sp3g30300' => 'spa', 'Sp5g33700' => 'spa', 'Sp6g24870' => 'spa', 'Sp6g24880' => 'spa', 'Sp6g31540' => 'spa', 'TAR112G0001' => 'tar', 'TAR375G0059' => 'tar', 'TAR376G0554' => 'tar', 'TAR383G0205' => 'tar', 'TAR383G0931' => 'tar', 'TAR626G0237' => 'tar', 'TAR629G3042' => 'tar', 'THA.LOC104799147' => 'tha', 'THA.LOC104807383' => 'tha', 'THA.LOC104810426' => 'tha', 'THA.LOC104811217' => 'tha', 'THA.LOC104811219' => 'tha', 'THA.LOC104812304' => 'tha', 'THA.LOC104813992' => 'tha', 'THA.LOC104820178' => 'tha', 'THA.LOC104822579' => 'tha', 'Thecc.02G053400' => 'tca', 'Thecc.02G054600' => 'tca', 'Thecc.02G054900' => 'tca', 'Thecc.03G317100' => 'tca', 'Thecc.05G231800' => 'tca', 'Thecc.07G132700' => 'tca', 'Thecc.08G053000' => 'tca', 'Thecc.09G061500' => 'tca', 'Thecc.09G080700' => 'tca', 'Thhalv10000065m.g' => 'esa', 'Thhalv10012021m.g' => 'esa', 'Thhalv10012772m.g' => 'esa', 'Thhalv10015373m.g' => 'esa', 'Thhalv10018110m.g' => 'esa', 'Thhalv10020041m.g' => 'esa', 'Thhalv10023104m.g' => 'esa', 'Thhalv10023165m.g' => 'esa', 'TPR.G2413' => 'tpr', 'TPR.G28340' => 'tpr', 'TPR.G28947' => 'tpr', 'TPR.G29499' => 'tpr', 'TPR.G31309' => 'tpr', 'TPR.G31322' => 'tpr', 'TPR.G3553' => 'tpr', 'TPR.G3556' => 'tpr', 'TPR.G3562' => 'tpr', 'TPR.G38070' => 'tpr', 'TPR.G987' => 'tpr', 'TWI12G0243' => 'twi', 'TWI34G0267' => 'twi', 'TWI34G0292' => 'twi', 'TWI34G1445' => 'twi', 'TWI38G1145' => 'twi', 'TWI38G1669' => 'twi', 'TWI60G1589' => 'twi', 'TWI63G0002' => 'twi', 'TWI75G0516' => 'twi', 'TWI79G0299' => 'twi', 'unitig_0.g2094' => 'ugi', 'unitig_0.g2360' => 'ugi', 'unitig_0.g33' => 'ugi', 'unitig_0.g34' => 'ugi', 'unitig_22.g6713' => 'ugi', 'unitig_578.g16566' => 'ugi', 'unitig_749.g13834' => 'ugi', 'vmacro00066' => 'vma', 'vmacro04382' => 'vma', 'vmacro06321' => 'vma', 'vmacro06322' => 'vma', 'vmacro17180' => 'vma', 'vmacro17331' => 'vma', 'vmacro17333' => 'vma', 'vmacro21844' => 'vma', 'vmacro23530' => 'vma', 'VMungo0251G2109' => 'vmu', 'VMungo0720G1953' => 'vmu', 'VMungo1080G1394' => 'vmu', 'VMungo1309G0229' => 'vmu', 'VMungo1309G0519' => 'vmu', 'VMungo1309G0869' => 'vmu', 'VMungo1309G1121' => 'vmu', 'VMungo1309G1198' => 'vmu', 'Zm00001eb032540' => 'zma', 'Zm00001eb074090' => 'zma', 'Zm00001eb182210' => 'zma', 'Zm00001eb186970' => 'zma', 'Zm00001eb201020' => 'zma', 'Zm00001eb250070' => 'zma', 'Zm00001eb278700' => 'zma', 'Zm00001eb373650' => 'zma', 'Zm00001eb429250' => 'zma' ) $gf_id = 'HOM05D000560' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000560' ) $data_identifier = 'HOM05D000560' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 38, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 18, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 8, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 11, 'cqu' => (int) 21, 'bca' => (int) 28, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 6, 'cansat' => (int) 10, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 11, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 22, 'dca' => (int) 18, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 22, 'bvu' => (int) 10, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 24, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 21, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 12, 'lal' => (int) 8, 'lonja' => (int) 22, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 13, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 3, 'pax' => (int) 12, 'pgr' => (int) 13, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 12, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 14, 'sed' => (int) 13, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 9, 'esa' => (int) 8, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb429250' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1